.. CuBATS documentation master file, created by
   sphinx-quickstart on Wed May  8 11:38:33 2024.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

CuBATS
*******

.. include:: README.rst

Documentation
==============

.. toctree::
   :maxdepth: 2
   :caption: User-Guide

   installation
   examples

.. toctree::
   :maxdepth: 2
   :caption: CuBATS Architecture

   slide_collection
   registration
   segmentation
   quantification
   colocalization


Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`